List of all the pre-defined MEMC models
memc_all_configs.RdList of all the pre-defined MEMC models
Examples
memc_all_configs
#> $MEND
#> $name
#> [1] "MEND"
#>
#> $table
#> model DOMuptake POMdecomp MBdecay
#> 1 MEND MM MM LM
#>
#> $params
#> parameter description
#> 1 V_p maximum specific decomposition rate for POM by EP
#> 2 K_p half-saturation constant for decomposition of POM
#> 3 V_m maximum specific decomposition rate for MOM by EM
#> 4 K_m half-saturation constant for decomposition of MOM
#> 5 V_d maximum specific uptake rate of D for growth of MB
#> 6 K_d half-saturation constant of uptake of D for growth of MB
#> 7 f_d fraction of decomposed P allocated to DOM
#> 8 g_d fraction of dead B allocated to DOM
#> 9 p_ep fraction of mR for production of EP
#> 10 p_em fraction of mR for production of EM
#> 11 r_ep turnover rate of EP
#> 12 r_em turnover rate of EM
#> 13 Q_max maximum DOC sorption capacity
#> 14 K_ads specific adsorption rate
#> 15 K_des desorption rate
#> 16 dd_beta strength of density dependent microbial decay
#> 17 Input_POM POM input
#> 18 Input_DOM DOM input
#> 19 CUE carbon use efficiency
#> units value
#> 1 mgC mgC^-1 d^-1 14.000
#> 2 mgC / g soil 50.000
#> 3 mgC mgC^-1 d^-1 0.250
#> 4 mg C/g soil 250.000
#> 5 mgC mgC^-1 d^-1 3.000
#> 6 mg C/g soil 0.250
#> 7 <NA> 0.500
#> 8 <NA> 0.500
#> 9 <NA> 0.010
#> 10 <NA> 0.010
#> 11 mgC mgC^-1 d^-1 0.001
#> 12 mgC mgC^-1 d^-1 0.001
#> 13 mgC / g soil 3.400
#> 14 mgC mgC^-1 d^-1 0.006
#> 15 mgC mgC^-1 d^-1 0.001
#> 16 <NA> 1.000
#> 17 mg C 0.000
#> 18 mg C 0.000
#> 19 0.400
#>
#> $state
#> POM MOM QOM MB DOM EP EM IC
#> 10.00000 5.00000 0.10000 2.00000 1.00000 0.00001 0.00001 0.00000
#> Tot
#> 18.10002
#>
#>
#> $COMISSION
#> $name
#> [1] "COMISSION"
#>
#> $table
#> model DOMuptake POMdecomp MBdecay
#> 1 COMISSION MM RMM LM
#>
#> $params
#> parameter description
#> 1 V_p maximum specific decomposition rate for POM by EP
#> 2 K_p half-saturation constant for decomposition of POM
#> 3 V_m maximum specific decomposition rate for MOM by EM
#> 4 K_m half-saturation constant for decomposition of MOM
#> 5 V_d maximum specific uptake rate of D for growth of MB
#> 6 K_d half-saturation constant of uptake of D for growth of MB
#> 7 f_d fraction of decomposed P allocated to DOM
#> 8 g_d fraction of dead B allocated to DOM
#> 9 p_ep fraction of mR for production of EP
#> 10 p_em fraction of mR for production of EM
#> 11 r_ep turnover rate of EP
#> 12 r_em turnover rate of EM
#> 13 Q_max maximum DOC sorption capacity
#> 14 K_ads specific adsorption rate
#> 15 K_des desorption rate
#> 16 dd_beta strength of density dependent microbial decay
#> 17 Input_POM POM input
#> 18 Input_DOM DOM input
#> 19 CUE carbon use efficiency
#> units value
#> 1 mgC mgC^-1 d^-1 14.000
#> 2 mgC / g soil 50.000
#> 3 mgC mgC^-1 d^-1 0.250
#> 4 mg C/g soil 250.000
#> 5 mgC mgC^-1 d^-1 3.000
#> 6 mg C/g soil 0.250
#> 7 <NA> 0.500
#> 8 <NA> 0.500
#> 9 <NA> 0.010
#> 10 <NA> 0.010
#> 11 mgC mgC^-1 d^-1 0.001
#> 12 mgC mgC^-1 d^-1 0.001
#> 13 mgC / g soil 3.400
#> 14 mgC mgC^-1 d^-1 0.006
#> 15 mgC mgC^-1 d^-1 0.001
#> 16 <NA> 1.000
#> 17 mg C 0.000
#> 18 mg C 0.000
#> 19 0.400
#>
#> $state
#> POM MOM QOM MB DOM EP EM IC
#> 10.00000 5.00000 0.10000 2.00000 1.00000 0.00001 0.00001 0.00000
#> Tot
#> 18.10002
#>
#>
#> $CORPSE
#> $name
#> [1] "CORPSE"
#>
#> $table
#> model DOMuptake POMdecomp MBdecay
#> 1 CORPSE RMM LM LM
#>
#> $params
#> parameter description
#> 1 V_p maximum specific decomposition rate for POM by EP
#> 2 K_p half-saturation constant for decomposition of POM
#> 3 V_m maximum specific decomposition rate for MOM by EM
#> 4 K_m half-saturation constant for decomposition of MOM
#> 5 V_d maximum specific uptake rate of D for growth of MB
#> 6 K_d half-saturation constant of uptake of D for growth of MB
#> 7 f_d fraction of decomposed P allocated to DOM
#> 8 g_d fraction of dead B allocated to DOM
#> 9 p_ep fraction of mR for production of EP
#> 10 p_em fraction of mR for production of EM
#> 11 r_ep turnover rate of EP
#> 12 r_em turnover rate of EM
#> 13 Q_max maximum DOC sorption capacity
#> 14 K_ads specific adsorption rate
#> 15 K_des desorption rate
#> 16 dd_beta strength of density dependent microbial decay
#> 17 Input_POM POM input
#> 18 Input_DOM DOM input
#> 19 CUE carbon use efficiency
#> units value
#> 1 mgC mgC^-1 d^-1 14.000
#> 2 mgC / g soil 50.000
#> 3 mgC mgC^-1 d^-1 0.250
#> 4 mg C/g soil 250.000
#> 5 mgC mgC^-1 d^-1 3.000
#> 6 mg C/g soil 0.250
#> 7 <NA> 0.500
#> 8 <NA> 0.500
#> 9 <NA> 0.010
#> 10 <NA> 0.010
#> 11 mgC mgC^-1 d^-1 0.001
#> 12 mgC mgC^-1 d^-1 0.001
#> 13 mgC / g soil 3.400
#> 14 mgC mgC^-1 d^-1 0.006
#> 15 mgC mgC^-1 d^-1 0.001
#> 16 <NA> 1.000
#> 17 mg C 0.000
#> 18 mg C 0.000
#> 19 0.400
#>
#> $state
#> POM MOM QOM MB DOM EP EM IC
#> 10.00000 5.00000 0.10000 2.00000 1.00000 0.00001 0.00001 0.00000
#> Tot
#> 18.10002
#>
#>
#> $MEMS
#> $name
#> [1] "MEMS"
#>
#> $table
#> model DOMuptake POMdecomp MBdecay
#> 1 MEMS LM LM LM
#>
#> $params
#> parameter description
#> 1 V_p maximum specific decomposition rate for POM by EP
#> 2 K_p half-saturation constant for decomposition of POM
#> 3 V_m maximum specific decomposition rate for MOM by EM
#> 4 K_m half-saturation constant for decomposition of MOM
#> 5 V_d maximum specific uptake rate of D for growth of MB
#> 6 K_d half-saturation constant of uptake of D for growth of MB
#> 7 f_d fraction of decomposed P allocated to DOM
#> 8 g_d fraction of dead B allocated to DOM
#> 9 p_ep fraction of mR for production of EP
#> 10 p_em fraction of mR for production of EM
#> 11 r_ep turnover rate of EP
#> 12 r_em turnover rate of EM
#> 13 Q_max maximum DOC sorption capacity
#> 14 K_ads specific adsorption rate
#> 15 K_des desorption rate
#> 16 dd_beta strength of density dependent microbial decay
#> 17 Input_POM POM input
#> 18 Input_DOM DOM input
#> 19 CUE carbon use efficiency
#> units value
#> 1 mgC mgC^-1 d^-1 14.000
#> 2 mgC / g soil 50.000
#> 3 mgC mgC^-1 d^-1 0.250
#> 4 mg C/g soil 250.000
#> 5 mgC mgC^-1 d^-1 3.000
#> 6 mg C/g soil 0.250
#> 7 <NA> 0.500
#> 8 <NA> 0.500
#> 9 <NA> 0.010
#> 10 <NA> 0.010
#> 11 mgC mgC^-1 d^-1 0.001
#> 12 mgC mgC^-1 d^-1 0.001
#> 13 mgC / g soil 3.400
#> 14 mgC mgC^-1 d^-1 0.006
#> 15 mgC mgC^-1 d^-1 0.001
#> 16 <NA> 1.000
#> 17 mg C 0.000
#> 18 mg C 0.000
#> 19 0.400
#>
#> $state
#> POM MOM QOM MB DOM EP EM IC
#> 10.00000 5.00000 0.10000 2.00000 1.00000 0.00001 0.00001 0.00000
#> Tot
#> 18.10002
#>
#>
#> $BAMS
#> $name
#> [1] "BAMS"
#>
#> $table
#> model DOMuptake POMdecomp MBdecay
#> 1 BAMS MM MM LM
#>
#> $params
#> parameter description
#> 1 V_p maximum specific decomposition rate for POM by EP
#> 2 K_p half-saturation constant for decomposition of POM
#> 3 V_m maximum specific decomposition rate for MOM by EM
#> 4 K_m half-saturation constant for decomposition of MOM
#> 5 V_d maximum specific uptake rate of D for growth of MB
#> 6 K_d half-saturation constant of uptake of D for growth of MB
#> 7 f_d fraction of decomposed P allocated to DOM
#> 8 g_d fraction of dead B allocated to DOM
#> 9 p_ep fraction of mR for production of EP
#> 10 p_em fraction of mR for production of EM
#> 11 r_ep turnover rate of EP
#> 12 r_em turnover rate of EM
#> 13 Q_max maximum DOC sorption capacity
#> 14 K_ads specific adsorption rate
#> 15 K_des desorption rate
#> 16 dd_beta strength of density dependent microbial decay
#> 17 Input_POM POM input
#> 18 Input_DOM DOM input
#> 19 CUE carbon use efficiency
#> units value
#> 1 mgC mgC^-1 d^-1 14.000
#> 2 mgC / g soil 50.000
#> 3 mgC mgC^-1 d^-1 0.250
#> 4 mg C/g soil 250.000
#> 5 mgC mgC^-1 d^-1 3.000
#> 6 mg C/g soil 0.250
#> 7 <NA> 0.500
#> 8 <NA> 0.500
#> 9 <NA> 0.010
#> 10 <NA> 0.010
#> 11 mgC mgC^-1 d^-1 0.001
#> 12 mgC mgC^-1 d^-1 0.001
#> 13 mgC / g soil 3.400
#> 14 mgC mgC^-1 d^-1 0.006
#> 15 mgC mgC^-1 d^-1 0.001
#> 16 <NA> 1.000
#> 17 mg C 0.000
#> 18 mg C 0.000
#> 19 0.400
#>
#> $state
#> POM MOM QOM MB DOM EP EM IC
#> 10.00000 5.00000 0.10000 2.00000 1.00000 0.00001 0.00001 0.00000
#> Tot
#> 18.10002
#>
#>
#> $MIMICS
#> $name
#> [1] "MIMCS"
#>
#> $table
#> model DOMuptake POMdecomp MBdecay
#> 1 MIMCS MM MM DD
#>
#> $params
#> parameter description
#> 1 V_p maximum specific decomposition rate for POM by EP
#> 2 K_p half-saturation constant for decomposition of POM
#> 3 V_m maximum specific decomposition rate for MOM by EM
#> 4 K_m half-saturation constant for decomposition of MOM
#> 5 V_d maximum specific uptake rate of D for growth of MB
#> 6 K_d half-saturation constant of uptake of D for growth of MB
#> 7 f_d fraction of decomposed P allocated to DOM
#> 8 g_d fraction of dead B allocated to DOM
#> 9 p_ep fraction of mR for production of EP
#> 10 p_em fraction of mR for production of EM
#> 11 r_ep turnover rate of EP
#> 12 r_em turnover rate of EM
#> 13 Q_max maximum DOC sorption capacity
#> 14 K_ads specific adsorption rate
#> 15 K_des desorption rate
#> 16 dd_beta strength of density dependent microbial decay
#> 17 Input_POM POM input
#> 18 Input_DOM DOM input
#> 19 CUE carbon use efficiency
#> units value
#> 1 mgC mgC^-1 d^-1 14.000
#> 2 mgC / g soil 50.000
#> 3 mgC mgC^-1 d^-1 0.250
#> 4 mg C/g soil 250.000
#> 5 mgC mgC^-1 d^-1 3.000
#> 6 mg C/g soil 0.250
#> 7 <NA> 0.500
#> 8 <NA> 0.500
#> 9 <NA> 0.010
#> 10 <NA> 0.010
#> 11 mgC mgC^-1 d^-1 0.001
#> 12 mgC mgC^-1 d^-1 0.001
#> 13 mgC / g soil 3.400
#> 14 mgC mgC^-1 d^-1 0.006
#> 15 mgC mgC^-1 d^-1 0.001
#> 16 <NA> 2.000
#> 17 mg C 0.000
#> 18 mg C 0.000
#> 19 0.400
#>
#> $state
#> POM MOM QOM MB DOM EP EM IC
#> 10.00000 5.00000 0.10000 2.00000 1.00000 0.00001 0.00001 0.00000
#> Tot
#> 18.10002
#>
#>
# Return the summary table for dynamics used in model configurations
summary(memc_all_configs)
#>
#>
#> |model |DOMuptake |POMdecomp |MBdecay |
#> |:---------|:---------|:---------|:-------|
#> |MEND |MM |MM |LM |
#> |COMISSION |MM |RMM |LM |
#> |CORPSE |RMM |LM |LM |
#> |MEMS |LM |LM |LM |
#> |BAMS |MM |MM |LM |
#> |MIMCS |MM |MM |DD |